YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|115512204, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.88
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPTAAQPGIP LAIWQTRRRC EMGSGWHEWP LMIFTVFGQC VAGGFIVLAL ALLKGDLRAE  60
   61 AQQRVIACML GLWVLMGIGF IASMLHLGSP MRAFNSLNRV GASALSNEIA SGSIFFAVGG 120
  121 IGWLLAMLKK LSPALRTLWL VVTMVLGVVF VWMMVRVYNS IDTVPTWYSI WTPMGFFLTM 180
  181 FMGGPLLGYL LLSLAGVDGW AMRLLPAISV LALVVSGVMS VMQGAELANI HSSVQQAAAL 240
  241 VPDYGALMSW RIVLLAVALC LWIAPQLKGY QPAVPLLSVS FILLLAGELI GRGVFYGLHM 300
  301 TVGMAVAS

Type	Start	End	Confidence
Non-Cytoplasmic	1	30	0.99
Transmembrane Helix	31	53	0.93
Cytoplasmic	54	64	0.91
Transmembrane Helix	65	87	0.91
Non-Cytoplasmic	88	108	0.83
Transmembrane Helix	109	127	0.95
Cytoplasmic	128	136	0.83
Transmembrane Helix	137	155	0.96
Non-Cytoplasmic	156	173	0.78
Transmembrane Helix	174	193	0.93
Cytoplasmic	194	203	0.73
Transmembrane Helix	204	225	0.89
Non-Cytoplasmic	226	245	0.89
Transmembrane Helix	246	265	0.92
Cytoplasmic	266	273	0.84
Transmembrane Helix	274	296	0.88
Non-Cytoplasmic	297	308	0.90