YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|117622983, gi...
Protein type:	Transmembrane
Type Confidence:	0.55
Topology Confidence:	0.49
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVSGHRFDAQ TLHSFIQAVF RQMGSEEQEA KLVADHLIAA NLAGHDSHGI GMIPSYVRSW  60
   61 SQGHLQINHH AKVVKEAGAA VTLDGDRAFG QVAAHEAMAL GIEKARQHGI AAVALHNSHH 120
  121 IGRIGYWAEQ CAAAGFVSIH FVSVVGIPMV APFHGRDSRF GTNPFCVVFP RKDNFPLLLD 180
  181 YATSAIAFGK TRVAWHKGVP VPPGCLIDVN GVPTTNPAVM QESPLGSLLT FAEHKGYALA 240
  241 AMCEILGGAL SGGKTTHQET LQTSPDAILN CMTTIIINPE LFGAPDCSAQ TEAFAEWVKA 300
  301 SPHDDDKPIL LPGEWEVNTR RERQEQGIPL DAGSWQAICD AARQIGMPEE TLQAFCQQLA 360
  361 S

Type	Start	End	Confidence
Cytoplasmic	1	130	0.51
Transmembrane Helix	131	151	0.49
Non-Cytoplasmic	152	361	0.93