YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|115511461, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.67
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	29	0.79
Transmembrane Helix	30	62	0.67
Non-Cytoplasmic	63	77	0.64
Transmembrane Helix	78	98	0.89
Cytoplasmic	99	107	0.85
Transmembrane Helix	108	131	0.89
Non-Cytoplasmic	132	137	0.68
Transmembrane Helix	138	158	0.86
Cytoplasmic	159	172	0.88
Transmembrane Helix	173	195	0.90
Non-Cytoplasmic	196	202	0.79
Transmembrane Helix	203	226	0.88
Cytoplasmic	227	237	0.89
Transmembrane Helix	238	258	0.90
Non-Cytoplasmic	259	262	0.82
Transmembrane Helix	263	284	0.85
Cytoplasmic	285	291	0.89
Transmembrane Helix	292	313	0.90
Non-Cytoplasmic	314	319	0.79
Transmembrane Helix	320	339	0.96
Cytoplasmic	340	350	0.89
Transmembrane Helix	351	373	0.90
Non-Cytoplasmic	374	382	0.79
Transmembrane Helix	383	402	0.93
Cytoplasmic	403	644	0.92

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTTKPSKGRR GTISNVCWNG RRHIMDSHTL IQALIYLGSA ALIVPIAVRL GLGSVLGYLI  60
   61 AGCIIGPWGL RLVTDAESIL HFAEIGVVLM LFIIGLELDP QRLWKLRAAV FGGGALQMVI 120
  121 CGGLLGLFCM LLGLRWQVAE LIGMTLALSS TAIAMQAMNE RNLMVTQMGR SAFAVLLFQD 180
  181 IAAIPLVAMI PLLAASSAST TMGAFVLSAL KVAGALALVV LLGRYVTRPA LRFVARSGLR 240
  241 EVFSAVALFL VFGFGLLLEE VGLSMAMGAF LAGVLLASSE YRHALESDIE PFKGLLLGLF 300
  301 FIGVGMSIDF GTLIENPLRI VILLLGFLII KIAMLWLIAR PLQVPNKQRR WFAVLLGQGS 360
  361 EFAFVVFGAA QMANVLEPEW AKSLTLAVAL SMAATPILLV ILNRLEQSST EEAREADEID 420
  421 EEQPRVIIAG FGRFGQITGR LLLSSGVKMV VLDHDPDHIE TLRKFGMKVF YGDATRMDLL 480
  481 ESAGAAKAEV LINAIDDPQT NLQLTEMVKE HFPHLQIIAR ARDVDHYIRL RQAGVEKPER 540
  541 ETFEGALKTG RLALESLGLG PYEARERADV FRRFNIQMVE EMAMVENDTK ARAAVYKRTS 600
  601 AMLSEIITED REHLSLIQRH GWQGTEEGKH TGNMADEPET KPSS