YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|117622903, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.60
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	11	0.62
Transmembrane Helix	12	29	0.60
Non-Cytoplasmic	30	31	0.52
Transmembrane Helix	32	52	0.86
Cytoplasmic	53	94	0.87
Transmembrane Helix	95	119	0.85
Non-Cytoplasmic	120	164	0.95
Transmembrane Helix	165	187	0.89
Cytoplasmic	188	204	0.87
Transmembrane Helix	205	223	0.95
Non-Cytoplasmic	224	284	0.91
Transmembrane Helix	285	303	0.95
Cytoplasmic	304	313	0.77
Transmembrane Helix	314	335	0.92
Non-Cytoplasmic	336	358	0.87
Transmembrane Helix	359	380	0.88
Cytoplasmic	381	385	0.66
Transmembrane Helix	386	406	0.77
Non-Cytoplasmic	407	411	0.62
Transmembrane Helix	412	431	0.92
Cytoplasmic	432	447	0.87
Transmembrane Helix	448	469	0.92
Non-Cytoplasmic	470	514	0.81
Transmembrane Helix	515	539	0.87
Cytoplasmic	540	557	0.72
Transmembrane Helix	558	581	0.90
Non-Cytoplasmic	582	589	0.77

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MHCECRRDNR RVAGVFITGL SGLCPDQCGG VLMAAQGFLL IATFLLVFMV LARPLGSGLA  60
   61 RLINDIPLPG TTGVERVLFS ALGVSDREMN WKQYLSAILG LNILGLAVLF FMLLGQHYLP 120
  121 LNPQQLPGLS WDLALNTAVS FVTNTNWQSY SGETTLSYFS QMAGLTVQNF LSAASGIAVI 180
  181 FALIRAFTRQ SMNTLGNAWV DLLRITLWVL TPVALLIALF FIQQGALQNF LPYQAVTTIE 240
  241 GAQQLLPMGP VASQEAIKML GTNGGGFFNA NSSHPFENPT ALTNFVQMLA IFLIPTALCF 300
  301 AFGEVAGDRR QGRMLLWAMS VIFVICVGVV MWAEVQGNPH LLALGADSSI NMEGKESRFG 360
  361 VLVSSLFAVV TTAASCGAVI AMHDSFTALG GMVPMWLMQI GEVVFGGVGS GLYGMMLFVL 420
  421 LAVFIAGLMI GRTPEYLGKK IDVREMKLTA LAILVTPTLV LMGAALAMMT DAGRSAMLNP 480
  481 GPHGFSEVLY AVSSAANNNG SAFAGLSANS PFWNCLLALC MFVGRFGVII PVMAIAGSLV 540
  541 SKKSQPASSG TLPTHGPLFV GLLIGTVLLV GALTFIPALA LGPVAEYLS