YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|117623167, gi...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.96
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKDLTVLSRW RYSWRILDDN EAQKMKKTAI AIAVALAGFA TVAQAAPKDN TWYTGAKLGW  60
   61 SQYHDTGFIN NNGPTHENQL GAGAFGGYQV NPYVGFEMGY DWLGRMPYKG SVENGAYKAQ 120
  121 GVQLTAKLGY PITDDLDVYT RLGGMVWRAD TKSNVYGKNH DTGVSPVFAG GVEYAITPEI 180
  181 ATRLEYQWTN NIGDAHTIGT RPDNGMLSLG VSYRFGQGEA APVVAPAPAP APEVQTKHFT 240
  241 LKSDVLFTFN KATLKPEGQA ALDQLYSQLS NLDPKDGSVV VLGYTDRIGS DAYNQALSER 300
  301 RAQSVVDYLI SKGIPADKIS ARGMGESNPV TGNTCDNVKQ RAALIDCLAP DRRVEIEVKG 360
  361 IKDVVTQPQA

Type	Start	End	Confidence
Signal Peptide	1	45	0.96
N-region	1	36
H-region	37	42
C-region	43	45
Cleavage Site	45	46
Non-Cytoplasmic	46	370	0.99