YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|115512836, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.89
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTRREIMSKS KMIVRTKFID RACHWTVVIC FFLVALSGIS FFFPTLQWLT QTFGTPQMGR  60
   61 ILHPFFGIAI FVALMFMFVR FVHHNIPDKK DIPWLLNIVE VLKGNEHKVA DVGKYNAGQK 120
  121 MMFWSIMSMI FVLLVTGVII WRPYFAQYFP IQVVRYSLLI HAAAGIILIH AILIHMYMAF 180
  181 WVKGSIKGMI EGKVSRRWAK KHHPRWYREI EKAEAKKESE EGL

Type	Start	End	Confidence
Cytoplasmic	1	20	0.99
Transmembrane Helix	21	43	0.96
Non-Cytoplasmic	44	60	0.93
Transmembrane Helix	61	82	0.93
Cytoplasmic	83	122	0.96
Transmembrane Helix	123	144	0.91
Non-Cytoplasmic	145	157	0.90
Transmembrane Helix	158	181	0.89
Cytoplasmic	182	223	0.99