YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|117622809, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNVAFSGSNL QTSASDKSHQ LVEWGPWRFT LIGLIFRLYP MSSLNIKQGS EAHFPEYPLA  60
   61 SPSNNEIDLL SLIEVLWRAK KTVMAVVFAF ACAGLLISFI LPQKWTSSAV ITPAEAIQWQ 120
  121 DLEKTFTKLR VLDLDINIDR GGAFNLFIKR FQSVSLLEEY LRSSPYVMDQ LKEAKIDELD 180
  181 LHRAIVALSE KMKAVDDNAS KKKDEPSLYT SWTLSFTAPT SEEAQKVLAG YIDYISALVV 240
  241 KESIENVRNK LEIKTQFEKE KLAQDRIKTK NQLDANIQRL NYSLDIANAA GIKKPVYSNG 300
  301 QAVKDDPDFS ISLGADGIER KLEIEKAVTD VAELNGELRN RQYLVEQLTK ANINDVNFTP 360
  361 FKYQLRPSLP VKKDGPGKSI IVILSALIGG MVACGGVLLR HAMASRKQDA MMADHLV

Type	Start	End	Confidence
Cytoplasmic	1	81	0.86
Transmembrane Helix	82	101	0.93
Non-Cytoplasmic	102	379	0.94
Transmembrane Helix	380	402	0.88
Cytoplasmic	403	417	0.89