YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|117623776, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.71
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	53	0.77
Transmembrane Helix	54	75	0.71
Non-Cytoplasmic	76	89	0.95
Transmembrane Helix	90	113	0.92
Cytoplasmic	114	126	0.83
Transmembrane Helix	127	146	0.95
Non-Cytoplasmic	147	166	0.86
Transmembrane Helix	167	185	0.95
Cytoplasmic	186	195	0.79
Transmembrane Helix	196	216	0.93
Non-Cytoplasmic	217	227	0.84
Transmembrane Helix	228	249	0.91
Cytoplasmic	250	260	0.76
Transmembrane Helix	261	283	0.90
Non-Cytoplasmic	284	302	0.91
Transmembrane Helix	303	322	0.95
Cytoplasmic	323	329	0.89
Transmembrane Helix	330	352	0.91
Non-Cytoplasmic	353	364	0.90

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVVIRASPRG NNPYVSNPAH CVHLSSVQLK NCARSTALWL PSRHCRARIS QNPILLSNLT  60
   61 PTAARPAIPL VIWLIRRKCK MGNGWHEWPL VIFTVLGQCV VGALIVSGIG WFAAKNNADR 120
  121 QHIIRGMFFL WLLMGIGFIA SVMHLGSPLR AFNSLNRIGA SGLSNEIAAG SIFFAVGGLW 180
  181 WLVAVIGKMP QALGKLWLLV SMALGIIFVW MMTCVYQIDT VPTWHNGYTT LAFFLTVLLS 240
  241 GPILAATILR AARVTFNTTP FAIISILALI ACAGLIVLQG LSLASIHSSV QQASALVPDY 300
  301 ASLQVWRVVL LCAGLGCWLC PLIRRREPHV AGLVLGLILI LGGEMIGRVL FYGLHMTVGM 360
  361 AIAG