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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: CHD7_CHICK
Protein type: Transmembrane
Type Confidence: 0.88
Topology Confidence: 0.49
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MADPGMMSLF GEDGNIFSEG LEGLGECGYP ENTVNPMGQQ MPMDQGFPSL QSSLHHPPAN  60
   61 QNQAKLTHFD HYNQYEQQKM HLMDQPNRMI SNAPGNGIAS PHSQYHNPPV PQVPHGSGAS 120
  121 GQMGVYPSMQ NERHGQPFVD SGSMWGPRAV QVPDQIRAPY QQQQQQPQPT QPPQAPSGPP 180
  181 GQGHPQHMQQ MGNYMARGDF SMQQHGQPQQ QRMNQFSQGQ EGLNQGNPFI ATSGPGHLSH 240
  241 VPQQNPSMAP SLRHSVQQFH HHPPTALHGE SVAHSPRFSP NPPQQGAVRP QTLNFSSRSQ 300
  301 TVPSPTINNS GQYSRYPYSN LNQGLVNNTG MNQNLGLTNN TPMNQSVPRY PNAVGFPSNS 360
  361 GQGLMHQQPI HPSGSLNQMN TQTMHPSQPQ GTYASPPPMS PMKAMSNPAG TPPPQVRPGS 420
  421 AGIPMEVGSY PNIPHPQPSH QPPGAMGIGQ RNMGPRNMQQ NRPFMGMSST PREMGGHMRP 480
  481 NGCPGVGLAD PQAIQERLIS GQQLPSQQQS FQQQMPTCPP MQPHPGIHHQ SSPPPHPHHQ 540
  541 PWAQLHQSPQ NTPQKVPVLQ HSPSEPFLEK PVPDMTQVSG PNTQLVKSDD YLPSVEPQPQ 600
  601 QKKKKKKNNH IAAEGPSKSF GKEDFPGGLD SQNLSRNSVD CSQEDKKKKK KPKAKKEPKD 660
  661 PKEPKEKKEP KTPKVPKTPK EPKEKKAKNT TPKPKTSKKT SNKKTDSESS AAKKKVNKGK 720
  721 EGSENSDLDK TPPPSPHPED EDDPGVQKRR SSRQVKRKRY TEDLEFKISD EEADDADAAG 780
  781 RDSPSNTSQS EQQESADAEG PVVEKIMSSR SVKKKMENGE EVEIEEFYVK YKNFSYLHCQ 840
  841 WASVEELDKD KRIQQKIKRF KAKQGQNKFL SEIDDELFNP DYVEIDRILD FSRSTDDNGE 900
  901 PVTHYLVKWC SLPYEDSTWE LKQDIDQAKI EEFEKLMSRE PEMERVERPP ADDWKKSESS 960
  961 REYKNNNKLR EYQLEGVNWL LFNWYNTRNC ILADEMGLGK TIQSITFLYE IYLKGIHGPF1020
 1021 LVIAPLSTIP NWEREFRTWT ELNVVVYHGS QASRRTIQLY EMYFKDPQGR VIKGSYKFHA1080
 1081 IITTFEMILT DCPELRNIPW RCVVIDEAHR LKNRNCKLLE GLKMMDLEHK VLLTGTPLQN1140
 1141 TVEELFSLLH FLEPGRFPSE TTFMQEFGDL KTEEQVQKLQ AILKPMMLRR LKEDVEKNLA1200
 1201 PKEETIIEVE LTNIQKKYYR AILEKNFAFL SKGGGQANVP NLLNTMMELR KCCNHPYLIN1260
 1261 GAEEKILEEF KETHNADSPD FQLQAMIQAA GKLVLIDKLL PKLKAGGHRV LIFSQMVRCL1320
 1321 DILEDYLIQR RYPYERIDGR VRGNLRQAAI DRFSRPDSDR FVFLLCTRAG GLGINLTAAD1380
 1381 TCIIFDSDWN PQNDLQAQAR CHRIGQSKSV KIYRLITRNS YEREMFDKAS LKLGLDKAVL1440
 1441 QSMSGRENAT NGVQQLSKKE IEDLLRKGAY GALMDEEDEG SKFCEEDIDQ ILLRRTHTIT1500
 1501 IESEGKGSTF AKASFVASGN RTDISLDDPN FWQKWAKKAE LDIDALNGRN NLVIDTPRVR1560
 1561 KQTRLYSAVK EDELMEFSDL ESDSEEKPST KPRRPQDKSQ GYARSECFRV EKNLLVYGWG1620
 1621 RWTDILSHGR YKRQLTEQDV ETICRTILVY CLNHYKGDEN IKSFIWDLIT PTADGQTRAL1680
 1681 VNHSGLSAPV PRGRKGKKVK AQSSQPMLQD ADWLTTCNPD VLFQEDSYRK HLKHHCNKVL1740
 1741 LRVRMLYYLR QEVIGDQADR ILEGADSSEV DVWIPEPFHA EVPADWWDKE ADKSLLIGVF1800
 1801 KHGYEKYNSM RADSTLCFLE RVGMPDAKAI AAEQRGTDML ADGGDGGEFD REDEDPEYKP1860
 1861 TRTPFKDEID EFANSPPEDK EESIEIHPNK HSESNSELGQ LYWPNTSTLT TRLRRLITAY1920
 1921 QRSYKRQQMR QEALMKTDRR RRRPREEVRA LEAEREAIIT EKRQKWTRRE EADFYRVVST1980
 1981 FGIIFDPIKH QFDWNQFRAF ARLDKKSDES LEKYFNGFVN MCRRVCRMPV KPDDEPPDLS2040
 2041 TMIEPITEER ASRTLYRIEL LRKIREQVLH HPQLGERLKL CQPSLDLPEW WECGKHDKDL2100
 2101 LIGAAKHGVS RTDYHILNDP ELSFLEAHKN FAQNRGTGNA NTVSSLHPVG AGCSQTPPIV2160
 2161 PSTPVQEEKS TEQTESKVEG SENPAAKEKS DIKEETDIAD KDTKQDCDAE AETGSVKCEL2220
 2221 KDIEMSTDVD PKSISEKGSE EDEEEKLDDD DKSEESSQPE AGAVSQGKNF DEESNASMST2280
 2281 ARDETRDGFY MEDGDPSVVQ LLHERTFAFS FWPKDRVMIN RLDNICEAVL KGKWPVNRRQ2340
 2341 MFDFQGLIPG YTPTAVDSPL QKRSFAELSM IGQASISGSE DITASPQLSK EDALNLSVPR2400
 2401 QRRRRRRKIE IEAERAAKRR NLMEMVAQLR ESQVVSENGQ EKVVDLSKAS REATSSTSNF2460
 2461 SSVTSKFILP NVSTPVSDAF KTQMELLQAG LSRTPTRHLL NGSLIDGEPP MKRRRGRRKN2520
 2521 VEGLDLLFMS NKRTSLTVED AEVTKAFEED MEALPARNIP SPGQLDPDTR IPVINLEDGT2580
 2581 RLVGEDAPKN KDLVEWLKLH PTYTVDMPSY VPKSADVLFS SFQKPKQKRH RCRNPNKLDI2640
 2641 NTLTGEERVP VVNKRNGKKM GGAMAPPMKD LPRWLEENPE FAVAPDWTDI VKQSGFVPES2700
 2701 MFDRLLTGPV VREEGASRRG RRPKSEIAKA AAAAAAVAST SGINPLLMNS LFAGMDLTSL2760
 2761 QNLQNLQSLQ LAGLMGFPPG LATAAAAGGD AKNPAAMLPL MLPGMAGLPN MFGLSGLLNN2820
 2821 PITATTGNAT TASGQGETED GASKAEEKKN ENEEENKDSE KSTDTVSATD SANGSVSAAT2880
 2881 AATTATATTT TTTNTGLPTN PLAFNPFLLS TMAPGLFYPS MFLPPGLGGL TLPGFPALAG2940
 2941 LQNAVGSNEE KATDKTEGTA FKDEENLEGS DAEESLDKTA DSSILEDEIA QGEELDSLDG3000
 3001 GEEIENNEND E

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