YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|115361495
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.47
Topology Confidence:	0.45
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVKSHIGSWI LVLFVAMWSD VGLCNKXPKP GGGWNTGGSR YPGQXSPGGN XYPPXGGGGW  60
   61 GQPHGGGWGQ PHGGGWGQPH GGGWGQPHGG GGWGQGGSHS QWNKPSKPKT NVKHVAGAAA 120
  121 AGFLVGGLGG YMLGSAMSRP LIHFGNDYED RYYRENMYRY PNQVYYRPVD QYSNQNNFVH 180
  181 DCVNITVKQH TVTTTTKGEN FTETDIKIME RVVEQMCITQ YQRESQAYYQ RGASVILFSS 240
  241 PPVILLISFL IFLIVG

Type	Start	End	Confidence
Signal Peptide	1	24	0.45
N-region	1	15
H-region	16	21
C-region	22	24
Cleavage Site	24	25
Non-Cytoplasmic	25	113	0.71
Transmembrane Helix	114	134	0.83
Cytoplasmic	135	232	0.63
Transmembrane Helix	233	255	0.91
Non-Cytoplasmic	256	256	0.65