YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|111146170
Protein type: Transmembrane
Type Confidence: 0.75
Topology Confidence: 0.47
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDQRNLTLPT PAATTIMSSS SAAMSAGFAS LGGPTTSALT GSTIALATTT TAPPTTTPAT  60
   61 FFTYSIPGMD IAPGPFIFTY VSEFLSLITP EELPLDSIRD VLHKNTSLLD FASNAIKIES 120
  121 GFIALMSVFA ILALVPLIAT CAWCCGRRST QEEVDHIRNA PCHIRDESLE ESLRCRKSAG 180
  181 LVTLWVVFIL LTLSDFSIFY ANSRLSAGIE MTPEMVKSAV HDVEVFLKDT HLQIKQKLDN 240
  241 GFHVSVERVV KDLEDVDVLL GEPIQAEISA HTGLELAYDS LTTLSLANAE LIYRVLMLQE 300
  301 TVGRALKLSQ EAAARMEELQ IQLSVLQRQC TYRDRPLCDT LRIRSFEENG VVDALKTLQE 360
  361 DQSIFRMRYL GEIEFGATVK NLTSEVGVSR SIFSNFPQQV KHDTAYERNY TLEQLASIRH 420
  421 RTTANAQQLT STVNGLLRRL EDTWSSLQPA YNELKEWADA YWSVGWIAGT VIVWVMLFML 480
  481 MSYCCFLCES NAKSGVVFFI AVMLICLASI CLTIFGVFSL AVGGNAEVFV CRSLYDEDYN 540
  541 MLGKLLDKPG YAYAREPQTG IIGELLRPVG VNRSVVNVGL GQALRGCEQN QASYNVFQLD 600
  601 AFVNTSKIAD LRQFPKVSTA IDAISVSGRT LLSLTQSVQN ILENMLQTSS FNLTTYRSSV 660
  661 GAPTPEKDLA TFIDQMQRVA LQIQDVATSS RMTTLGSRSK RLQASILQPL ENLQNEILYH 720
  721 LTALELQRDP WAKQVNQTLN HLKSIQSYLE NKAGEICHNM TRDYRDRLKA YLTTSKATME 780
  781 SQLGDTTTKC RPFYDTFDAS RTFLCRNMVD FINGLTFFIF LTLLLWAIGT PVGLNLITVQ 840
  841 TRLNVMQAAQ ARSKGRHRRS DRSPEHEQRS GSRGRKKQRT SSSATSGRSG KRDQSRERST 900
  901 SSTARPKPPL 

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle