YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|89212808
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.85
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEGKEEDVKL GANKFSERQP IGTSAQTDKD YKEPPPAPLF EPGELKSWSF YRAGIAEFVA  60
   61 TFLFLYITVL TVMGVSQSKT KCTTVGIQGI AWAFGGMIFA LVYCTAGISG GHINPAVTFG 120
  121 LLLARKLSLT RAVFYMIMQC LGAICGAGVV KGFEGDSRYE MLGGGANVVN HGYTKGDGLG 180
  181 AEIIGTFVLV YTVFSATDAK RNARDSHVPI LAPLPIGFAV FLVHLATIPI TGTGINPARS 240
  241 LGAAIIYNKD HAWDDHWIFW VGPFIGAALA AIYHQIIIRA IPFKTRA

Type	Start	End	Confidence
Cytoplasmic	1	52	0.92
Transmembrane Helix	53	73	0.87
Non-Cytoplasmic	74	89	0.82
Transmembrane Helix	90	113	0.85
Cytoplasmic	114	131	0.75
Transmembrane Helix	132	153	0.91
Non-Cytoplasmic	154	177	0.90
Transmembrane Helix	178	197	0.89
Cytoplasmic	198	207	0.89
Transmembrane Helix	208	228	0.89
Non-Cytoplasmic	229	255	0.89
Transmembrane Helix	256	277	0.92
Cytoplasmic	278	287	0.90