YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|76800638
Protein type:	Transmembrane
Type Confidence:	0.72
Topology Confidence:	0.54
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNNSTTLSLS INPSFSPPFP SPATLITTPS SFSTFRQNSL RFAFYRSFGS KPIASFCRKA  60
   61 RLCSLQGSSS AKSRKSFALG ATEMTIAEDC LLEAVEEEEG PPDFSLLDPE SNSRPRRIAL 120
  121 FVEPSPFAYV SGYKNRFQNS IKYLREMGDE VMVVTTHEGA PKEFHGAKLI GSRSFPCPWY 180
  181 QKVPLSLALS PRIISAVAQF KPDIIHASSP GIMVFGALII AKLLSVPIVM SYHTHVPVYI 240
  241 PRYTFSWLVQ PMWWVITADL TLVPSAAIGR DLEAARATAA NKIRLWNKGV DSESFHPRFK 300
  301 SHEMRLRLSN GEPDKPLIVH VGRLGVEKSL DFLRSLMDSL PEARIAFIGD GPSREDLEKL 360
  361 FEGMPAVFTG MLGGEELSQA YASGDVFVMP SESETLGLVV LEAMSSGIPV VGARAGGIPD 420
  421 IIPEDQDGKI GFLYTPGDLE DCLSKLKPLL DDKDLRETMG IAARLEMEKY DWRAATRKIR 480
  481 NENYNAAIWF WNKKRAQLLR PFQWLAKRIF PSSPDQEGNS QGC

Type	Start	End	Confidence
Cytoplasmic	1	210	0.61
Transmembrane Helix	211	230	0.63
Non-Cytoplasmic	231	251	0.76
Transmembrane Helix	252	269	0.54
Cytoplasmic	270	523	0.56