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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|187477707, gi...
Protein type: Transmembrane
Type Confidence: 0.57
Topology Confidence: 0.51
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VLSILFVSRR QRVAQRVLAA SLAFSGGLLA PAAGAQTAVG SYDIAAGPLA EALTRYAQAR  60
   61 GVVLSFEPSR LRGLSSPGLK GEYGVAEGFA RLLAGSGMQA RQGADRVWTI HAAPQHGTQT 120
  121 LAPIAVTTMD SALMPTVGYV AKASMTATKT DTPLIETPQS VSVVTREQIR EQGAHTLNQV 180
  181 LRYTAGVTPE SRGATATRLD QFTVRGFSAS SYLDGMRVFG GRDALPQVDA YRLERVDIIK 240
  241 GPSSVLYGQG GPGGVVNQVS KRPLDERLNE IELQAGNFHH RRVNMDFGGP IDEGGEFLYR 300
  301 LTGSAYGADG QVEHTKEKRY FIAPAFTWRP NADTSLTLLA NFQRDPDMGS YGALPAMRTV 360
  361 LSAPDGRKLP SNFYDGDANF EESDRRSHSL GYVFEHRFND TVKVSQSLRY LHSEGVYRSV 420
  421 YGASTNYYGY TGPDYRYQKR ASIATDVDVD ALTLDNNLQA NFNTGPLAHT LLFGFDYQHV 480
  481 RTNTLAGYGT APSLDVFNPD NSMTIAVPAY SSDQTQRQVQ TGLYAQDQIK LDRLSLVLGG 540
  541 RYDWARTHTG TDNLATGRHS SSALAAEAFT GRAGVIYNFD NGLAPYASYS ESFEPQSGAG 600
  601 WNNSPFKPIK GKQYEMGLKY QPPGSNTLIT LAAFDIRRSN MLTTDPDPSH MCGTGRCNVQ 660
  661 AGEVRTQGFE LEGKAEPLRG LSVTAAYTYL DNRYEKANPN AVGFNLQGKR PYGVPEHQAS 720
  721 VWTRYQLQEG PLAGLGVGAG VRYLGSSWGN DKNTFKVPSA TLVDLMLDYD LGRLTASLKG 780
  781 MQVALNVSNL FNKEYVASCY DDSWCWYGYQ RSVKASLRYR W

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle