YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|115423159, gi...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.95
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNTSPASLPL SLPAGLPSVA RHCLRVLQRL QQGTLHLELP DGSTLQLGQG GQPHASLVLR  60
   61 DWGVFAAVLR SGDIGLAEAY IAGDWSTPNV ADLLRLMLAN RQALESLVYG SWWGRLAYRL 120
  121 KHLLNRNTRA GSRRNIHAHY DLGNAFYRLW LDPSMNYSSA WFQGNLAGDL TQAQHAKVRR 180
  181 ALHGAELRPG CRLLEIGCGW GALAEMAAGE FQAHVTGVTL SSEQLAYAQQ RLHQAGLASQ 240
  241 ADLRLQDYRD IQDPPFDAIC SIEMVEAVGQ AYWPSYFSTL ARLLKPGGRA CVQSIVIDDA 300
  301 LFERYVRGTD FIQQYVFPGG CLPSPARFRA EAQQAGLRVV EAFSFGPDYA ETLRRWRQQF 360
  361 MQQGAQVLAL GFDTQFLRTW EFYLAYCEAA FDSGNIDVAQ YILVKD

Type	Start	End	Confidence
Signal Peptide	1	20	0.95
N-region	1	11
H-region	12	17
C-region	18	20
Cleavage Site	20	21
Non-Cytoplasmic	21	406	0.99