YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|115422784, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.71
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VFSFTIEQLN GWMGQFLWPF IRILALVGSA PLFSESTIPV KVKIGLAFML AAAIAPGLPP  60
   61 MPSVSPSSYE GLLLLAQQVL IGVALGFTMR VVFSAVQTAG EYIGLQMGLS FASFFDPGTG 120
  121 ANTAVLSRFM NILAMLIFLA LDGHLLMLAA LVRSFDILPL TPAVLDRNGL GVLVQWGGTV 180
  181 FISGLLLALP LVCALLTINL AMGILNRAAP QLTVFAVGFP IMLTIGLLVL SVVLPHSGPF 240
  241 LEQLFERGLQ TMSDVAQGFA GQRP

Type	Start	End	Confidence
Non-Cytoplasmic	1	13	0.71
Transmembrane Helix	14	34	0.86
Cytoplasmic	35	41	0.63
Transmembrane Helix	42	63	0.84
Non-Cytoplasmic	64	72	0.64
Transmembrane Helix	73	93	0.84
Cytoplasmic	94	131	0.57
Transmembrane Helix	132	152	0.89
Non-Cytoplasmic	153	178	0.76
Transmembrane Helix	179	201	0.89
Cytoplasmic	202	211	0.72
Transmembrane Helix	212	234	0.92
Non-Cytoplasmic	235	264	0.84