YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|108773545, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.52
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	6	0.59
Transmembrane Helix	7	24	0.76
Non-Cytoplasmic	25	25	0.30
Transmembrane Helix	26	45	0.60
Cytoplasmic	46	58	0.49
Transmembrane Helix	59	78	0.93
Non-Cytoplasmic	79	92	0.52
Transmembrane Helix	93	115	0.85
Cytoplasmic	116	120	0.48
Transmembrane Helix	121	137	0.62
Non-Cytoplasmic	138	147	0.56
Transmembrane Helix	148	170	0.89
Cytoplasmic	171	177	0.76
Transmembrane Helix	178	196	0.77
Non-Cytoplasmic	197	204	0.54
Transmembrane Helix	205	227	0.81
Cytoplasmic	228	238	0.58
Transmembrane Helix	239	260	0.89
Non-Cytoplasmic	261	276	0.65
Transmembrane Helix	277	297	0.89
Cytoplasmic	298	324	0.66
Transmembrane Helix	325	345	0.57
Non-Cytoplasmic	346	346	0.52

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNPITLIIIY FTILMGPAIT MSSSNLLLMW VGLEMSLLAI IPLLANKKSP RSTEAATKYF  60
   61 LTQATASMII LLVIILNYKQ SGMWTLQQQT NNMLLNMMLI SLAMKLGLAP FHYWLPEVTQ 120
  121 GIPLHIGLIL LTWQKIAPLS ILYQFYQLLS PTITTILAIS SVFVGAWGGL NQTQTRKIMA 180
  181 YSSIAHMGWM TAILPYNPNL TLLNLTIYIL LTVPMFITLM TNSATTINTL SLAWNKTPMI 240
  241 LTMASIILLS LGGLPPLTGF LPKWTIISEL LKNNCSTLST LMAIMALLSL FFYTRLIYSM 300
  301 SLTMFPTNNN SKMISHHHQN PKHNFILPTL TVLSTLTLPL SSQLIT