YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|108773554, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.52
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	32	0.52
Transmembrane Helix	33	56	0.87
Cytoplasmic	57	76	0.62
Transmembrane Helix	77	99	0.83
Non-Cytoplasmic	100	111	0.56
Transmembrane Helix	112	133	0.91
Cytoplasmic	134	139	0.54
Transmembrane Helix	140	165	0.76
Non-Cytoplasmic	166	177	0.68
Transmembrane Helix	178	200	0.92
Cytoplasmic	201	228	0.66
Transmembrane Helix	229	250	0.86
Non-Cytoplasmic	251	287	0.73
Transmembrane Helix	288	308	0.92
Cytoplasmic	309	321	0.75
Transmembrane Helix	322	340	0.94
Non-Cytoplasmic	341	347	0.77
Transmembrane Helix	348	371	0.90
Cytoplasmic	372	380	0.86

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTNIRKSHPL FKIINHSFID LPAPSNISSW WNFGSLLGVC LMVQILTGLF LAMHYTSDTM  60
   61 TAFSSVTHIC RDVNYGWLIR YLHANGASMF FICLFLHVGR GLYYGSYTFL ETWNIGIILL 120
  121 FAVMATAFMG YVLPWGQMSF WGATVITNLL SAIPYIGTTL VEWIWGGFSV DKATLTRFFA 180
  181 FHFILPFIIA ALAIVHLLFL HETGSNNPTG LNSNADKIPF HPYYTIKDLL GVFMLLLFLM 240
  241 TLVLFFPDLL GDPDNYTPAN PLNTPPHIKP EWYFLFAYAI LRSIPNKLGG VVALILSILI 300
  301 LAFLPFLHTS KQRSLTFRPI TQILYWILVA NLLVLTWIGG QPVEHPFIII GQLASISYFS 360
  361 IILILMPISG IVEDKMLKWN