YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|93138735
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.61
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	23	0.86
Transmembrane Helix	24	45	0.65
Non-Cytoplasmic	46	62	0.74
Transmembrane Helix	63	84	0.72
Cytoplasmic	85	150	0.97
Transmembrane Helix	151	173	0.90
Non-Cytoplasmic	174	191	0.84
Transmembrane Helix	192	211	0.91
Cytoplasmic	212	220	0.77
Transmembrane Helix	221	243	0.91
Non-Cytoplasmic	244	268	0.87
Transmembrane Helix	269	288	0.88
Cytoplasmic	289	299	0.69
Transmembrane Helix	300	321	0.88
Non-Cytoplasmic	322	340	0.91
Transmembrane Helix	341	366	0.84
Cytoplasmic	367	391	0.86
Transmembrane Helix	392	413	0.89
Non-Cytoplasmic	414	420	0.77
Transmembrane Helix	421	443	0.93
Cytoplasmic	444	448	0.83
Transmembrane Helix	449	469	0.91
Non-Cytoplasmic	470	476	0.80
Transmembrane Helix	477	498	0.92
Cytoplasmic	499	518	0.87
Transmembrane Helix	519	539	0.69
Non-Cytoplasmic	540	785	0.61

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDAEAGAVAA AQELPWRQHY RNLLLLAYQS FGVVYGDLST SPLYVYKSTF SGRLGQYQDE  60
   61 QTVYGVLSLI FWTFTLVPLL KYVIIVLSAD DNGEGGPFAL YSLLCRHAKL SLLPNQQAAD 120
  121 EELSTYYRDG FAAQHGSSPW LRRFLEKHKT VKTGLLVVVL CAASMVIGDG VLTPAISVLS 180
  181 SMSGLQVRAT GLQERSVVLL SCIVLVGLFS LQHRGTHKVA FMFAPIVIIW LLCIGGIGLY 240
  241 NIVHWNPKIY QAISPYYIVK FFRTTGTDGW IALGGILLSM TGSEAMFADL GHFTSASVRL 300
  301 AFITIIYPCL ILQYMGQAAF LSKNMLHMRT SFYDSIPGPV FWPVFVVATL AAVVGSQAVI 360
  361 SATFSIVKQC HALGCFPRVK IVHTSRWIYG QIYIPEINWI LMVLCVAVTV AFGDTTLIGN 420
  421 AYGIACMTVM LITTFFMAFI IIFVWQKNII FALLFLLFFG SIETVYLSSS LMKVHQGGWV 480
  481 PLVLAFIFMS VMFIWHYGTK RKYQFDLQNK VSMRSILSLG PNLGIVRVPG IGLIYTELVT 540
  541 GVPAIFTHFV TNLPAFHEVL VFLCVKSVPV PYVQPDERYL VGRIGPRAYR MYRCIVRYGY 600
  601 KDVQRDDENF ENMLVMSIAR FIMMEAEDVS SSASYDIANE GRMAVIRTTD DAGTPLGMRD 660
  661 LGGLAESIST TRSSKSESLR SLQSSYEQES PSANRRRRVR FELPNEDAMD QQVKDELLAL 720
  721 VEAKHAGVAY IMGHSYIKAR RSSNFLKKFA VDVGYSFLRK NCRGPSVSLH IPHISLIEVG 780
  781 MIYYV