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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|115369869, gi...
Protein type: Transmembrane
Type Confidence: 0.91
Topology Confidence: 0.43
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQFPHSSWQR SEGLPQSAIL TLAQTPDGYL WAGTWEGLAR FDGARFTIFE NHTTPMLQAR  60
   61 SIRGLATSKD GTLWLGTEAG LTGMRDGTFF PVTAPEGVVL KDLRTLLPAQ DGSLWIATLG 120
  121 YGLLHYTGGH FQAWTTRTGL VDDYVMALAE GPDGTLWVGT TQGLQRWDGK ALRPGPPFSS 180
  181 PDNAEPSVRA LTVDPEGHLW AGTEDGSVYR QQEGKMRREP QASMPGNPIS ALLVDREGSL 240
  241 WVGSTGGGLL RLANGQRSVL DGAQGLAEEA VAALLEDAEG NIWIGTEEAG LHRLKDAPLT 300
  301 PYGRSEGLPH DVISSIHEAR DGSLWFASLG GGVTRWFAGQ MMTWNTQNGL GHDRVRSIAE 360
  361 DNNGGLWFST QTGLSRWQAG RFTTTLGHPH GLPSGPVRTV LVDTDNILWA GTQAGLARWN 420
  421 GEHFEMLTKK DGLPGDKITL LKHRTAGGFW VGTGGGGLAF YFRGHFTLVA SEGYPMFSEL 480
  481 SALHEEADGT LWLGTDEGLF LASAGHFTRF SQAEGLFNDR IFQILPDGLG YLWMSSNKGL 540
  541 FRVRQSELEA VAEGRRTRVT SRAYGEDEGM RAAECNGVGG PPGIRARDGR LWFPTVRGAV 600
  601 VYEPAHDKPP SPLAPMRIEE LRVDRHPVPL NSRDIPVGEG NVEFQYTTPS LYPPRQLRFR 660
  661 YQLEGFDPDW VEAGSRSVAY YTNLPPGHYR FRVEAIERDD GRVAPMAEMA LHLKPRFHQT 720
  721 LLFRGASFLA AALVVASAMG LRLRQSRLRE RELQAHVDQR TAELATLNAD LRNRLQELQS 780
  781 TRERLVHAEK MAAVGTLAAG VGHEINNPLA FIISNLHYAS LEVKHAAQQE PDQERWAEVE 840
  841 QALSEALLGA DRVRRIVQDL KTFSRVQPEH PQRVDLHEVL ELALSFADAE VRHRARVVKD 900
  901 YGTVPAVFGD EARMGQVFLN LVINAAQATP EGHADEHEIR ITTRQDEKGQ AVVAVSDTGI 960
  961 GIPPEVLPRI FEPFFTTKPV GVGTGLGLSI CHGYVQALGG DIRVHSTLGS GTTFEVTLPA1020
 1021 APAMSAEPSP PAPPAGAPPV WRSRLMIVDD EPLLASAMSR TLEPEHEVVP FTRARDALER1080
 1081 LRMGEHYHLI LCDLMMPEMT GMELYETLAR EAPAMAERMV FITGGAFTEA ARAFLDTHRL1140
 1141 PCLDKPFDPE VLRARLRSLL AGRDASQSAT AA

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle