YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CAPNS1
Protein type:	Transmembrane
Type Confidence:	0.98
Topology Confidence:	0.72
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFLVNSFLKG GGGGGGGGGG LGGGLGNVLG GLISGAGGGG GGGGGGGGGG GGGGGGTAMR  60
   61 ILGGVISAIS EAAAQYNPEP PPPRTHYSNI EANESEEVRQ FRRLFAQLAG DDMEVSATEL 120
  121 MNILNKVVTR HPDLKTDGFG IDTCRSMVAV MDSDTTGKLG FEEFKYLWNN IKRWQAIYKQ 180
  181 FDTDRSGTIC SSELPGAFEA AGFHLNEHLY NMIIRRYSDE SGNMDFDNFI SCLVRLDAMF 240
  241 RAFKSLDKDG TGQIQVNIQE WLQLTMYS

Type	Start	End	Confidence
Cytoplasmic	1	10	0.74
Transmembrane Helix	11	33	0.81
Non-Cytoplasmic	34	42	0.55
Transmembrane Helix	43	64	0.72
Cytoplasmic	65	268	0.86