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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|115369791, gi...
Protein type: Globular with Signal Peptide
Type Confidence: 0.65
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKPRKTGTLQ AVLATVLLAW VGGCSDFDEE GAAFCQRNPS RCGVDTTAPV ITQSSQSAPG  60
   61 VQVQGPVTLS VTAQDDETPQ LTFSWTANVG TVGVPTRTGN TSEVVWTSPS CVPAETVATV 120
  121 TVTVTNSVNA SVSKTFTLTA NACPAPAVSA AGDHTLALRR DGTVWAWGFN GSGQLGNGTA 180
  181 TDRATPVQVP GLTSVMAVAA SEAHSLALRS DGTVWAWGDN GYGQLGDGTK AQRTTPVQVL 240
  241 GLAGVTALAA GGNGTTVAIS AHSLALRSDG TVWAWGDNSA GQLGDGTTTE RATPVQVLGL 300
  301 TSVTALAAGA FHSLALRDDG TVWAWGNNSS GQLGDGTTTA RPTPVQVPGL TSVIAVAAGG 360
  361 GDDSLGMRGD HSLALKSDGT VWAWGYNLSR QFGDGMPATR TTPVQVSELT GGTALVAGDL 420
  421 HAVVLKSDGT VWAWGDNSSG QLGEGVTPVR AKPMQVSGLA AITALATGDG HSVAVGSDGG 480
  481 IWAWGDNRRG QLGIGITATR EIPVQATGLA SISALAAGDS HSLALRGNGS VWTWGSNAYG 540
  541 QLGDGTAIDR ATAAQVPGLT DITALAAGNH HSLALRNDGT VWVWGSNDFG QLGDGTVTSR 600
  601 KTPVQVSGLS AMRAVEAGPA HSVAVHLNGT VWVWGNNDFG QLGDGTVTSR AMPVQVSGLT 660
  661 GVTAVAVGVY HSLALRNDGT LWAWGYNNVG QLGNGTSGIQ STPAQVPGLT GVIALAAGNG 720
  721 HSLALRTDGT VWGWGANSFG QLGDGTTTPR STPTQVPGLT NVIALNAGAF YTVALRSERS 780
  781 VWEWGSKSAG QLGDGTVTQK TTPVQVSGLT DVTALAAGNA HALALRTDRT VWAWGGNQRG 840
  841 QIGDGTASIM PAPVNVSFP

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle