YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|115373087, gi...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.57
Topology Confidence:	0.56
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	39	0.56
N-region	1	30
H-region	31	36
C-region	37	39
Cleavage Site	39	40
Non-Cytoplasmic	40	192	0.97
Transmembrane Helix	193	214	0.93
Cytoplasmic	215	221	0.81
Transmembrane Helix	222	241	0.94
Non-Cytoplasmic	242	324	0.97
Transmembrane Helix	325	348	0.88
Cytoplasmic	349	357	0.89
Transmembrane Helix	358	380	0.93
Non-Cytoplasmic	381	436	0.94
Transmembrane Helix	437	460	0.90
Cytoplasmic	461	469	0.90
Transmembrane Helix	470	490	0.90
Non-Cytoplasmic	491	522	0.86
Transmembrane Helix	523	546	0.78
Cytoplasmic	547	577	0.87
Transmembrane Helix	578	600	0.82
Non-Cytoplasmic	601	628	0.93
Transmembrane Helix	629	647	0.95
Cytoplasmic	648	658	0.90

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGPDLNPPEK TSPGLRRPRV LVGLALALGL GLFVAHGLLA RAREDASLEQ VQRRALISLH  60
   61 ALAELVQRAG GSGDGVRAVV ASWQDQLPPG SAVRVVAFSG IRLEASTFPE DQGDKAAPRR 120
  121 LSREEKPLYD RGQRLRAAVE TNREESSARK QEMEAETLPG GGRLISAPVE VNGSVVGMVE 180
  181 LATPPLPKVE RPGAMPAMLA FLLPLLAVVA MGFAPLRRQW QLTAVAAVAF LVGLGAYAAH 240
  241 SLASLEGGVR GSQEAVAEQL KAMSERARTV MEAQNFPAEP PLAPGTWDAD LWRRPLGMLT 300
  301 VQGTVNEAVL QERVERQRGE ARNAFLGLGA VGLALVLLIG LGGVHQFAST VKEHRQAYLF 360
  361 ILPAMAGMGV LIFFPFLYGI TLSFTDANLY NSSQALPDIW IGLRNYQEIL GDFSVAHRAE 420
  421 NGQWVFNYLN FYWTLMFTVV WTITNVTIGV TVGLTLALIL NTPKLALRPV YRVLLILPWA 480
  481 MPNYITALIW KGMFHQQFGV VNHVIRLFGG QGLSWFESPF TSFFTALATN GWLSFPFMMV 540
  541 VSLGALQSIP AELYEAARVD GASRWEQFRA ITLPSLKPAL MPAVILSVVW TFNMFNIIFL 600
  601 VTEGEPGNST EILVTQAYKY AFQRYRHGYA AAYSTVIFGI LLLYSLVQNR ITRATEAT