YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SGPP1
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.76
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	127	0.96
Transmembrane Helix	128	148	0.88
Non-Cytoplasmic	149	157	0.74
Transmembrane Helix	158	177	0.76
Cytoplasmic	178	203	0.75
Transmembrane Helix	204	224	0.77
Non-Cytoplasmic	225	230	0.71
Transmembrane Helix	231	251	0.91
Cytoplasmic	252	256	0.79
Transmembrane Helix	257	278	0.88
Non-Cytoplasmic	279	289	0.82
Transmembrane Helix	290	309	0.94
Cytoplasmic	310	321	0.68
Transmembrane Helix	322	341	0.87
Non-Cytoplasmic	342	359	0.82
Transmembrane Helix	360	379	0.92
Cytoplasmic	380	415	0.94
Transmembrane Helix	416	437	0.93
Non-Cytoplasmic	438	441	0.76

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSLRQRLAQL VGRLQDPQKV ARFQRLCGVE APPRRSADRR EDEKAEAPLA GDPRLRGRQP  60
   61 GAPGGPQPPG SDRNQCPAKP DGGGAPNGVR NGLAAELGPA SPRRAGALRR NSLTGEEGQL 120
  121 ARVSNWPLYC LFCFGTELGN ELFYILFFPF WIWNLDPLVG RRLVVIWVLV MYLGQCTKDI 180
  181 IRWPRPASPP VVKLEVFYNS EYSMPSTHAM SGTAIPISMV LLTYGRWQYP LIYGLILIPC 240
  241 WCSLVCLSRI YMGMHSILDI IAGFLYTILI LAVFYPFVDL IDNFNQTHKY APFIIIGLHL 300
  301 ALGIFSFTLD TWSTSRGDTA EILGSGAGIA CGSHVTYNMG LVLDPSLDTL PLAGPPITVT 360
  361 LFGKAILRIL IGMVFVLIIR DVMKKITIPL ACKIFNIPCD DIRKARQHME VELPYRYITY 420
  421 GMVGFSITFF VPYIFFFIGI S