YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|115376875, gi...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.90
Topology Confidence:	0.65
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	22	0.87
N-region	1	13
H-region	14	19
C-region	20	22
Cleavage Site	22	23
Non-Cytoplasmic	23	262	0.96
Transmembrane Helix	263	283	0.94
Cytoplasmic	284	295	0.84
Transmembrane Helix	296	318	0.84
Non-Cytoplasmic	319	334	0.82
Transmembrane Helix	335	357	0.88
Cytoplasmic	358	375	0.89
Transmembrane Helix	376	397	0.94
Non-Cytoplasmic	398	408	0.68
Transmembrane Helix	409	431	0.81
Cytoplasmic	432	439	0.66
Transmembrane Helix	440	458	0.83
Non-Cytoplasmic	459	460	0.53
Transmembrane Helix	461	483	0.73
Cytoplasmic	484	518	0.54
Transmembrane Helix	519	539	0.91
Non-Cytoplasmic	540	558	0.57
Transmembrane Helix	559	581	0.93
Cytoplasmic	582	599	0.65

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNILIITACP SGVATTFLAA RALERAAQRR GWTPWVEMHS QLQPLALTDP AKVGATDLII  60
   61 AAVSTDVDLA RFTGKRVYQG PISQALPDPE AFLARAEREA KTLAVSSSES RPATAPAPKA 120
  121 SAASRKKIVA VTACPTGVAH TFMAAEALTQ AAGGLGHPIR VETQGSVGAQ NKLTPEEIQE 180
  181 AEVVILACDI EVDQSRFAGK RVWRTSTGAA LKKSNQTIQE ALDQAQPLGG EASRPSAQAA 240
  241 SAGKGGASGK RGPYRHLLTG VSFMLPMVVA GGLLIALSFV FGIDAFKQEG TLAAALMRIG 300
  301 GGTAFKLMVP LLAGYIAYSI ADRPGIAPGM IGGYLASDLG AGFLGGIAAG FLAGYTAQAM 360
  361 SRYIKLPRSV EALKPILLIP LGAGLLTGLV MIYVIGAPVA AVMSAMTTFL TNMGSGNAVL 420
  421 LGMLLGAMMC FDLGGPVNKA AYTFGVGLLS AGGPGAYGPM AAIMASGMVP PLGIGLASLL 480
  481 ARAKFSEPER EAGKASLALG LCFISEGAIP FMAKDPLRVI PICMIGGAIT GALSMYFSVQ 540
  541 LMAPHGGLFV LLIPNAVNHV LLYLLSILVG SLMVCFGYAF IKPGQTEMPG TLSSEGGAR