YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|115376911, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.78
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	37	0.90
Transmembrane Helix	38	60	0.78
Non-Cytoplasmic	61	76	0.88
Transmembrane Helix	77	99	0.89
Cytoplasmic	100	130	0.92
Transmembrane Helix	131	153	0.86
Non-Cytoplasmic	154	170	0.80
Transmembrane Helix	171	190	0.91
Cytoplasmic	191	197	0.81
Transmembrane Helix	198	218	0.93
Non-Cytoplasmic	219	243	0.87
Transmembrane Helix	244	266	0.86
Cytoplasmic	267	277	0.87
Transmembrane Helix	278	299	0.90
Non-Cytoplasmic	300	318	0.91
Transmembrane Helix	319	342	0.89
Cytoplasmic	343	369	0.89
Transmembrane Helix	370	390	0.93
Non-Cytoplasmic	391	396	0.82
Transmembrane Helix	397	418	0.96
Cytoplasmic	419	428	0.88
Transmembrane Helix	429	449	0.93
Non-Cytoplasmic	450	455	0.79
Transmembrane Helix	456	473	0.96
Cytoplasmic	474	656	0.98

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRHPVAPGAG SAKAGRVNAT TAAPGTPSEG PDTFKRTATL ALGALGIVYG DIGTSPLYAL  60
   61 RECFSGPHSI APTPENVMGV LSLIFWSLFV LISMKYLLFV TRADNRGEGG ILALMALVLQ 120
  121 RPKGIRAPHP ARPVLVALGL FGAALLYGDG IITPAMSVLS AVEGLSVATP LFEPYLLPIS 180
  181 LVILLGLFML QRKGTGGIGA LFGPVMTVWF VTLAVLGVKE LVQNLAVLGS LSPVHGVRFF 240
  241 LHNGGHGFLV LGSVFLVVTG GEALYADMGH FGVKPIRTAW FALVLPSLML NYLGQGALLL 300
  301 RAPEAARNPF YLLAPSWGLY PLVALAMVAA VIASQALIAG VFSLTRQAMQ LGYCPRMEVV 360
  361 HTSAEEMGQI YLPGLNFLLL AGVVLLVLGF RSSSALAAAY GIAVAGTATI TTVLAYVVAR 420
  421 ERWGWKRRVA LPVVGLFLAV DVSFFCANAV KIPDGGWFPL LLAAMLFTLL TTWKRGREIL 480
  481 AAKLREASME LKGLLDSLSG DHPPLRVPGT AVFMTGNPEG TPPALLHNLK HNKVLHEQVV 540
  541 LLTILSEEVP HVPPSERVEV EPLEQGFVRV IARYGFMENP SIPDILKRGR EQGLQFQLMS 600
  601 TSFFLGRETL IPSKKPGMAM WREALFAWMS RNARSATSYF RIPPNRVVEL GTQVEL