YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|115366906, gi...
Protein type:	Transmembrane
Type Confidence:	0.90
Topology Confidence:	0.28
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSRWHPAARR FRMARKLFCM FVAAFWTAFL FPFAVLASFI RGGDSWVTRH LWSPVLVWAG  60
   61 GGQMVVHGLE NVDPKRPTIY VSNHQSTLDI PVLFMAVPVN FRYVAKSQLA WVPFIGWYLW 120
  121 LAGHIFVNRS NRSDAIESLR AAARKIRGGT NIFLYPEGTR SPDGRILPFK KGPFALALEA 180
  181 RVPICPVTVE GTARIMPKNS WNITPGPVHV KIGKPIDTTG FADNDRAGLA RAVRDVIIAQ 240
  241 SLELGGLGGD PDNAIAASGH EGLSNPPPSA A

Type	Start	End	Confidence
Cytoplasmic	1	16	0.88
Transmembrane Helix	17	40	0.81
Non-Cytoplasmic	41	49	0.86
Transmembrane Helix	50	69	0.56
Cytoplasmic	70	86	0.51
Transmembrane Helix	87	101	0.28
Non-Cytoplasmic	102	108	0.47
Transmembrane Helix	109	128	0.73
Cytoplasmic	129	271	0.55