YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|115291577
Protein type:	Transmembrane
Type Confidence:	0.98
Topology Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLASMAAATS ITSSSRAFRF HRSLFLNTKP NIRNPPCLLF SPLLMRNRNG AGALTICFVA  60
   61 ERTRGREIPQ IEEDEKNMDE VFEQMNSASV RVAEKLARKK SERFTYLIAA LMSSMGITSM 120
  121 AILSVYYRFS WQMEGGDIPV TEMLGTFALS VGAAVGMEFW ARWAHRALWH ASLWHMHESH 180
  181 HKPREGPFEL NDVFAIINAV PAIALLNFGF FHKGLIPGLC FGAGLGITVF GMAYMFVHDG 240
  241 LVHRRFPVGP IANVPYFRKV AAAHQIHHTD KFQGVPYGLF LGPKELEEVG GNEELEKEIE 300
  301 RRIKRMNAL

Type	Start	End	Confidence
Cytoplasmic	1	103	0.97
Transmembrane Helix	104	126	0.93
Non-Cytoplasmic	127	142	0.85
Transmembrane Helix	143	164	0.89
Cytoplasmic	165	189	0.90
Transmembrane Helix	190	210	0.86
Non-Cytoplasmic	211	214	0.76
Transmembrane Helix	215	237	0.91
Cytoplasmic	238	309	0.95