YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|93115181
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.47
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	20	0.87
Transmembrane Helix	21	42	0.69
Non-Cytoplasmic	43	59	0.75
Transmembrane Helix	60	82	0.81
Cytoplasmic	83	145	0.78
Transmembrane Helix	146	165	0.83
Non-Cytoplasmic	166	166	0.28
Transmembrane Helix	167	185	0.47
Cytoplasmic	186	191	0.47
Transmembrane Helix	192	211	0.88
Non-Cytoplasmic	212	217	0.49
Transmembrane Helix	218	240	0.90
Cytoplasmic	241	265	0.61
Transmembrane Helix	266	285	0.82
Non-Cytoplasmic	286	296	0.60
Transmembrane Helix	297	318	0.87
Cytoplasmic	319	339	0.76
Transmembrane Helix	340	362	0.86
Non-Cytoplasmic	363	389	0.81
Transmembrane Helix	390	410	0.89
Cytoplasmic	411	420	0.70
Transmembrane Helix	421	441	0.96
Non-Cytoplasmic	442	447	0.69
Transmembrane Helix	448	467	0.93
Cytoplasmic	468	475	0.74
Transmembrane Helix	476	497	0.92
Non-Cytoplasmic	498	793	0.70

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDPDHGRCWG TSKKDSWKTL LLLSYQSLGV VYGDLGISPL YVYKSTFAED IHHSETNEEI  60
   61 FGVLSFVFWT LTLVPLFKYV FIVLRADDNG EGGTFALYSL ICRHAKVSLL PNRQVADEAL 120
  121 STYKLEHPPE QKNSSRVKML LEKHRVLHTA LLTLVLLGTC MVIGDGLLTP AISVFSAVSG 180
  181 LELSMSKEHH QYAVIPITCF ILVCLFALQH YGTHRVGFFF APVVLIWLLC ISALGLYNIF 240
  241 RWNPHVYQAL SPYYMFKFLK KTRKDGWMSL GGILLCITGS EAMFADLGHF SYTXIQIAFT 300
  301 FLVYPALILA YMGQAAYLSI HHDNSYQISF YVSVPEAVRG PVLIIAILAS VVGSQAIISG 360
  361 TFSIINQSQS LGCFPRVKVV HTSDKIHGQI YIPEINWILM ILCIAVTIGF RDTKHMGNAS 420
  421 GLAVMAVMLV TTCLTSLVII LCWHKPPIVA LSFLLFFGSI ELLYFSXSLT KFREGAWLPI 480
  481 LLALFLMTIM YVWHYATIKK YEFDLHNXVS LEWXLXLGPS LXIARVPGXG XVFTDLTSGI 540
  541 PANFSRFXTN LPAFHRVLVF VCVKSVPVPY VPPAERYLVG RVGPATHRSY RCIVRYGYRD 600
  601 VHQDVDSFES ELVGRLADFI RYDWVRTHGT DPCIEDDGSQ SGGSSSECRL TVIGNVAFSG 660
  661 TPAYEIEESL QPASVSIGFP TVESVTDVIE MEPISVTKRR VRFAIDDESE TDTRSETDVQ 720
  721 LQEELEELWA AQQSGTAFIL GHSHVRAKQG SSLVRRLAIN VGYNFLRRNC RGPDVALKVP 780
  781 PVSLHEVGMV YIV