YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|115313746, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.60
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNATSNSSNS CVIMNSLSGH LLMSMYIVAF ILGLLFNLVT IGPIIQQIYR KNVLGIYLFS  60
   61 LSISDLLYIL TMPLWIYYFN NNHRWTFGQE LCSLAGFFYY SNLYISIFLL CWISIDRCLA 120
  121 ITFPLRVQAF RRQRYAWIIC GLVYIFVMTL HSLVLYLDKL SDPPDDSEQR CYETFPMTER 180
  181 IAMFNLIRVG IGFFLPLIVI TVCYCLIPTK VQQSRGGGRS RQAQSEASVY GSHWYFLLLF 240
  241 CAIPHTPDGT IHCLLYCGR

Type	Start	End	Confidence
Non-Cytoplasmic	1	20	0.94
Transmembrane Helix	21	41	0.92
Cytoplasmic	42	53	0.77
Transmembrane Helix	54	77	0.91
Non-Cytoplasmic	78	95	0.90
Transmembrane Helix	96	115	0.88
Cytoplasmic	116	134	0.83
Transmembrane Helix	135	155	0.96
Non-Cytoplasmic	156	185	0.95
Transmembrane Helix	186	208	0.91
Cytoplasmic	209	228	0.92
Transmembrane Helix	229	246	0.66
Non-Cytoplasmic	247	259	0.60