YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|115496282, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.48
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDALLNTLFS SEEEELYVLD CLSYLMMAMA LITFVALLFE HVPYGRYASS RFGFPVNVKL  60
   61 AWFVQELPSF LLPLSLALWS SSSKIIHLPN QLLLLMFVCH YMQRSLIYPF LIRGGKSTPF 120
  121 ISLVLAFVFC IYNGYLQGRY LSHYADYPAD WVTHPCFIIG SCMWFLGWII NMHSDHILRN 180
  181 LRKPGETGYK IPRGGMFEYV SGANFFGEIV EWAGFALAGQ SIHSAAFALF TLIVLSSRGM 240
  241 DHHKWYLTKF EDYPKSRKAL IPFLL

Type	Start	End	Confidence
Cytoplasmic	1	15	0.70
Transmembrane Helix	16	39	0.85
Non-Cytoplasmic	40	66	0.55
Transmembrane Helix	67	101	0.64
Cytoplasmic	102	116	0.48
Transmembrane Helix	117	136	0.91
Non-Cytoplasmic	137	150	0.60
Transmembrane Helix	151	172	0.90
Cytoplasmic	173	190	0.61
Transmembrane Helix	191	207	0.48
Non-Cytoplasmic	208	212	0.51
Transmembrane Helix	213	235	0.81
Cytoplasmic	236	265	0.84