YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|115313281
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.71
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKDGPPEEST DPPPYSHEAI PEGFVNLAYS QDEKPHEDKP EEPPSDSKHK GKKGKNSKDN  60
   61 KEPMKSVGFF QLFRYATCPE VFLMLIGLLC AAAHGVALPL MCVVFGQMTD SFVQSGQTYN 120
  121 LTGFNGNFTS NFTFTLNNTL TCLAGSPEIG IEPKMTKQAY FFIGIGGAVL VLGTFQVMLF 180
  181 LLTAAKQTKR IRQKYFHAIL HQQMSWFDTH PIGELNIRLT DDINTINDGL GDKIAVFVQF 240
  241 FRSFISGLVI GFVFGWKLTL VILAVSPLLA GSAAVWSKIL ASLTSKELTA YAKAGAVAEE 300
  301 ILVAIWTVVA FNGQKKAVEK YEKNLVEAKD FGVKKAISTN VSMGLTQFIV FATYALAFWY 360
  361 GTKLSVDEPE NYTIGRVLTV FFSVMIGTFS LGQGAPNLEA IAKARGAAYE VYKTIDMPRP 420
  421 IDSSSKEGHK PDRVRGDIEF KNINFNYPSR KDVTILQGMS LKVPHGKTIA LVGASGCGKS 480
  481 TTIQLLQRFY DPDSGEVTLD GHDIRSLNVR WLRENMGIVS QEPVLFGTTI AENIRYGRED 540
  541 ATDADIEQAI KEANAYDFIS KLPDKLNTMV GERGAQLSGG QKQRIAIARA LVKNPKILLL 600
  601 D

Type	Start	End	Confidence
Cytoplasmic	1	80	0.96
Transmembrane Helix	81	103	0.88
Non-Cytoplasmic	104	159	0.91
Transmembrane Helix	160	184	0.90
Cytoplasmic	185	239	0.87
Transmembrane Helix	240	256	0.71
Non-Cytoplasmic	257	257	0.40
Transmembrane Helix	258	280	0.71
Cytoplasmic	281	338	0.60
Transmembrane Helix	339	361	0.82
Non-Cytoplasmic	362	371	0.75
Transmembrane Helix	372	395	0.79
Cytoplasmic	396	601	0.73