YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|115313002
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSTGLQLLGT TLGTLGWLGI IISCAIPLWR VTAFIGNNIV TAQTMWEGLW MSCVVQSTGQ  60
   61 MQCKVYDSML ALAQDLQASR AILVISAIVG LIAMFASFAG GKCTNCLADN SAKALVATTG 120
  121 GVAFIIAGIL GLVPPSWTAN TIIRDFYNPL VAEAQKREFG AAIFICWGAA VLLVIGGGLL 180
  181 CSSYPKARRK DAKSVKIKKN KDNVKFKVRC SRYLYTLVIT DKEKAEKLKQ SLPPGLAVKE 240
  241 LK

Type	Start	End	Confidence
Cytoplasmic	1	7	0.83
Transmembrane Helix	8	31	0.85
Non-Cytoplasmic	32	77	0.88
Transmembrane Helix	78	101	0.88
Cytoplasmic	102	113	0.84
Transmembrane Helix	114	133	0.93
Non-Cytoplasmic	134	158	0.87
Transmembrane Helix	159	181	0.92
Cytoplasmic	182	242	0.96