YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|115313006, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.60
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLDEVVVNEQ SSTDADESVP CFQTPGPTVT FHQIRYRIKE RLGMFSCQWR EKDILKDVSG  60
   61 IMNPGMNAIM GPTGSGKTSL LDVIAGRKDP KGLKSGQVLV DNTIVTSDLR LCSAYVVQND 120
  121 ILMGTLTVRE NLAFSANLRL SLKEYSSSDK EMRVNSVIQE LGLKDCADTK IGTMFLRGVS 180
  181 GGEKKRCSIG MELITSPSLL FLDEPTTGLD ANTANSIMEL LQNISKKGKT VIFSIHQPRY 240
  241 SIFRQFDHLT LMNKGEIIYA GAADKAIIYF EDLGYKCEPF NNPADFFLDV TNGTIRPHKS 300
  301 SNNISEKCSS SEEMVDNENP LAVMYRKSPY FTKLKDRLTE ISDGLDPEVT KGDKVGYATP 360
  361 FYYQLLLVSG RTIRNILRNP QTSYAQLFLN IFFGILVGLI YYQIPHTLPE ALQNRTGAFF 420
  421 FLVINMVFGN LSAVELFVSE RELFIHENSS GFYRTSAYFL SKVFADLIPN RILPVFIFSA 480
  481 IPYFMMGLKP EVEAFFLYCV TMSMVSLSAV SLAFLVSASV GSFAMANILI ALPYVFMMVF 540
  541 GGFLVNLNSM LSGLSWLKWA SIFRYGYNAL AINELKDQVF TDNLTRVTGD MYLDHQEIDR 600
  601 SAWGFWENQV ALAGIMFVCL ILAYVQLCRI NRWK

Type	Start	End	Confidence
Cytoplasmic	1	383	0.60
Transmembrane Helix	384	404	0.92
Non-Cytoplasmic	405	415	0.56
Transmembrane Helix	416	438	0.86
Cytoplasmic	439	466	0.58
Transmembrane Helix	467	486	0.77
Non-Cytoplasmic	487	493	0.69
Transmembrane Helix	494	516	0.91
Cytoplasmic	517	524	0.55
Transmembrane Helix	525	547	0.83
Non-Cytoplasmic	548	609	0.78
Transmembrane Helix	610	628	0.95
Cytoplasmic	629	634	0.73