YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	S39AC_BOVIN
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.99
Topology Confidence:	0.50
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	26	0.98
N-region	1	17
H-region	18	23
C-region	24	26
Cleavage Site	26	27
Non-Cytoplasmic	27	368	0.99
Transmembrane Helix	369	390	0.93
Cytoplasmic	391	398	0.86
Transmembrane Helix	399	421	0.91
Non-Cytoplasmic	422	443	0.93
Transmembrane Helix	444	465	0.87
Cytoplasmic	466	498	0.93
Transmembrane Helix	499	526	0.53
Non-Cytoplasmic	527	561	0.46
Transmembrane Helix	562	584	0.89
Cytoplasmic	585	590	0.48
Transmembrane Helix	591	613	0.84
Non-Cytoplasmic	614	624	0.50
Transmembrane Helix	625	648	0.88
Cytoplasmic	649	654	0.50

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MCFWTKPSVS WVSLFLLLSL DPSTETEKPS TQDSSSTWSP GQLTEVLRVL SADDPRPLNH  60
   61 SRSLIRTLLE KTGCPRRTDG RQGDCNLCFE PDALLLIAGG DFEDQLKEEV IQRVSLLLLY 120
  121 YIIHQEEICS SKLNMSNKEY TFYLHSLLSL RQDEDSYFLS QNETEDILAF TRQYFDTSRN 180
  181 QCMETKVLQK KSGILSSDGA DENTLPQLAA TIIALSLQGV CLGQRNLPPP DYFTEYIFSA 240
  241 LNSTNTLHLS ELDKLLNTLW TKSTCIRKDK IHQLRRKQNS LTLHDGDYSN LSVSMDPESE 300
  301 DGPISWDQTC FSAGQLVNIF LQNKLSPISK EDFKQMSPGI IQQLLSCSCQ LPQNQQAKIA 360
  361 PTTLEKYGYS TVAVTLLTLG SMLGTTLILF HSCEENYRLI LQLFVGLAVG TLSGDALLHL 420
  421 IPQILGLHMQ ETSEFGHFYE NKGHIWKLLG LIGGIHGFFL IEKCFTLLVS PGAKKGPEDA 480
  481 QAAEIPIPSV NTPNRKCKTI SLLAIMILVG DSLHNFADGL VIGAAFSSSS EAGVTTTIAI 540
  541 LCHEIPHEMG DFAVLLSSGL PVKIAILMNF ISALTAFIGL YIGLSVSTDP CIQNWILTVT 600
  601 AGMFLYLSLV EMLPEMTHVQ TQRPWLMFLL QNFGLTLGWL SLFLLAIYEQ NIKI