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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: S39AC_BOVIN
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.99
Topology Confidence: 0.50
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MCFWTKPSVS WVSLFLLLSL DPSTETEKPS TQDSSSTWSP GQLTEVLRVL SADDPRPLNH  60
   61 SRSLIRTLLE KTGCPRRTDG RQGDCNLCFE PDALLLIAGG DFEDQLKEEV IQRVSLLLLY 120
  121 YIIHQEEICS SKLNMSNKEY TFYLHSLLSL RQDEDSYFLS QNETEDILAF TRQYFDTSRN 180
  181 QCMETKVLQK KSGILSSDGA DENTLPQLAA TIIALSLQGV CLGQRNLPPP DYFTEYIFSA 240
  241 LNSTNTLHLS ELDKLLNTLW TKSTCIRKDK IHQLRRKQNS LTLHDGDYSN LSVSMDPESE 300
  301 DGPISWDQTC FSAGQLVNIF LQNKLSPISK EDFKQMSPGI IQQLLSCSCQ LPQNQQAKIA 360
  361 PTTLEKYGYS TVAVTLLTLG SMLGTTLILF HSCEENYRLI LQLFVGLAVG TLSGDALLHL 420
  421 IPQILGLHMQ ETSEFGHFYE NKGHIWKLLG LIGGIHGFFL IEKCFTLLVS PGAKKGPEDA 480
  481 QAAEIPIPSV NTPNRKCKTI SLLAIMILVG DSLHNFADGL VIGAAFSSSS EAGVTTTIAI 540
  541 LCHEIPHEMG DFAVLLSSGL PVKIAILMNF ISALTAFIGL YIGLSVSTDP CIQNWILTVT 600
  601 AGMFLYLSLV EMLPEMTHVQ TQRPWLMFLL QNFGLTLGWL SLFLLAIYEQ NIKI

YRC Informatics Platform - Version 3.0
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