YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	ALG9
Protein type:	Transmembrane
Type Confidence:	0.98
Topology Confidence:	0.68
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	109	0.82
Transmembrane Helix	110	131	0.68
Non-Cytoplasmic	132	138	0.75
Transmembrane Helix	139	158	0.95
Cytoplasmic	159	172	0.84
Transmembrane Helix	173	196	0.86
Non-Cytoplasmic	197	213	0.80
Transmembrane Helix	214	239	0.84
Cytoplasmic	240	250	0.84
Transmembrane Helix	251	273	0.89
Non-Cytoplasmic	274	304	0.81
Transmembrane Helix	305	330	0.80
Cytoplasmic	331	343	0.72
Transmembrane Helix	344	364	0.91
Non-Cytoplasmic	365	371	0.72
Transmembrane Helix	372	394	0.88
Cytoplasmic	395	405	0.73
Transmembrane Helix	406	426	0.86
Non-Cytoplasmic	427	611	0.81

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASRGARQRL KGSGASSGDT APAADKLREL LGSREAGGAE HRTELSGNKA GQVWAPEGST  60
   61 AFKCLLSARL CAALLSNISD CDETFNYWEP THYLIYGEGF QTWEYSPAYA IRSYAYLLLH 120
  121 AWPAAFHARI LQTNKILVFY FLRCLLAFVS CICELYFYKA VCKKFGLHVS RMMLAFLVLS 180
  181 TGMFCSSSAF LPSSFCMYTT LIAMTGWYMD KTSIAVLGVA AGAILGWPFS AALGLPIAFD 240
  241 LLVMKHRWKS FFHWSLMALI LFLVPVVVID SYYYGKLVIA PLNIVLYNVF TPHGPDLYGT 300
  301 EPWYFYLING FLNFNVAFAL ALLVLPLTSL MEYLLQRFHV QNLGHPYWLT LAPMYIWFII 360
  361 FFIQPHKEER FLFPVYPLIC LCGAVALSAL QKCYHFVFQR YRLEHYTVTS NWLALGTVFL 420
  421 FGLLSFSRSV ALFRGYHGPL DLYPEFYRIA TDPTIHTVPE GRPVNVCVGK EWYRFPSSFL 480
  481 LPDNWQLQFI PSEFRGQLPK PFAEGPLATR IVPTDMNDQN LEEPSRYIDI SKCHYLVDLD 540
  541 TMRETPREPK YSSNKEEWIS LAYRPFLDAS RSSKLLRAFY VPFLSDQYTV YVNYTILKPR 600
  601 KAKQIRKKSG G