YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	RFT1_XENTR
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.78
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	12	0.91
Transmembrane Helix	13	36	0.81
Non-Cytoplasmic	37	42	0.78
Transmembrane Helix	43	62	0.86
Cytoplasmic	63	82	0.90
Transmembrane Helix	83	105	0.93
Non-Cytoplasmic	106	120	0.89
Transmembrane Helix	121	143	0.88
Cytoplasmic	144	158	0.79
Transmembrane Helix	159	179	0.90
Non-Cytoplasmic	180	186	0.62
Transmembrane Helix	187	206	0.91
Cytoplasmic	207	330	0.87
Transmembrane Helix	331	351	0.93
Non-Cytoplasmic	352	369	0.83
Transmembrane Helix	370	392	0.84
Cytoplasmic	393	402	0.83
Transmembrane Helix	403	423	0.89
Non-Cytoplasmic	424	429	0.67
Transmembrane Helix	430	450	0.78
Cytoplasmic	451	460	0.74
Transmembrane Helix	461	483	0.90
Non-Cytoplasmic	484	495	0.74
Transmembrane Helix	496	517	0.94
Cytoplasmic	518	539	0.82

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGSQEVLMDA TKLASYSVIL QILFRVLTFA LNAFTLRYVS KEIIGIVNVR LTLFYTTVVF  60
   61 LAREAFRRAC LSHSAQQSWR HTIHLTWLAV PLGICWSFIL GWIWLQILEV PEPEAIPYYN 120
  121 IGVWAFGFSA VVELLAEPFW VLAQAHLFVK LKVVAESLAI IIRCSVTVIL VLLCPQWGLL 180
  181 IFSLAQVLYT SALALCYIAY FARFLGSLEA EKKPFPLRRM REFLPRFSSS QAFLDWKQAW 240
  241 LAWSFFKQSF LKQILTEGER YVMTFLNVLS FGDQGVYDIV NNLGSLVARF IFLPIEESFY 300
  301 VFFAKVLERG KKVQSQRKEE ISMASEVLES LLKLVTLIGL VIIAFGYAYS HLALDIYGGS 360
  361 MLSGGSGPVL LRCYCLYVLL LAINGVTECF TFASMGKEDV DRYNYVMLGL SLSFLCLSYY 420
  421 MTLWLGSVGF ILANCFNMGL RITHSLLYIM RYYKGSPYQP LIGLLPSPVV VCVLAVSAAV 480
  481 TGYSEVALCC DKGWLLCLGH IVVGGLCLLV TLGAAVLSEK KLTHFIRSHL LSRHQRKEQ