YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|115260230, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.61
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	5	0.65
Transmembrane Helix	6	25	0.81
Cytoplasmic	26	62	0.76
Transmembrane Helix	63	85	0.90
Non-Cytoplasmic	86	136	0.88
Transmembrane Helix	137	159	0.90
Cytoplasmic	160	176	0.91
Transmembrane Helix	177	197	0.94
Non-Cytoplasmic	198	254	0.87
Transmembrane Helix	255	275	0.92
Cytoplasmic	276	284	0.71
Transmembrane Helix	285	307	0.92
Non-Cytoplasmic	308	327	0.75
Transmembrane Helix	328	350	0.83
Cytoplasmic	351	355	0.54
Transmembrane Helix	356	376	0.71
Non-Cytoplasmic	377	380	0.67
Transmembrane Helix	381	402	0.91
Cytoplasmic	403	420	0.89
Transmembrane Helix	421	445	0.88
Non-Cytoplasmic	446	485	0.72
Transmembrane Helix	486	512	0.80
Cytoplasmic	513	528	0.60
Transmembrane Helix	529	552	0.91
Non-Cytoplasmic	553	567	0.61

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTLNGWLQIL LYCGIVLVLV KPLGGYMTRV YNGERTFLSP VLVPIERGLY RIAGTSEREE  60
   61 QHWTSYAFAM LMFNLLGVLV LYALLRFQDI LPYNPAGMAA VPPELSFNTA VSFPTNTNWQ 120
  121 NYGGESTMSY LTQMAGFTVQ NFLSAATGMA IAVAFIRAFA RASGKAIGNF WVDMIRGTFY 180
  181 ILLPICIVLT IVYVYLGVPQ TLGPYVNATT LEGAQQTIAV GPVASQLAIK MLGTNGGGFF 240
  241 NANSAHPFEN PDAISNLIQM VSIFAIGAAL TNVFGRMVGN QRQGWAILAT MGVLFVAGVI 300
  301 VTYWAEAAGN PLMHAFGLGG GNMEGKEVRF GVAMSSLFAV ITTAASCGAV NAMHGSFTAL 360
  361 GGLIPLINMQ LGEIIVGGVG AGFYGILLFI IVAVFVAGLM VGRTPEYLGK KIEAKEMKMA 420
  421 VLAILCLPLA MLVFTAIATV LPSAVASIGT AGPHGFSEIL YAYTSAAANN GSAFGGLTGN 480
  481 TPWYNITLGI GMLAGRFLVI IPALAIAGSL IAKKTVPASA GTFPTDGPLF VGLLVGTILI 540
  541 VGGLTFFPAL ALGPVVEHLV MIAGQTF