YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|126701056, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.48
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSILSIYIGY VTDLIVGDPY SFPHPVRFIG KLINFTQGII RKVSKNDRQL KFGGFILWLI  60
   61 TVGITYLTTY AIVKLFSFNI LLSIVVNSFI IYTTLATKCL KDEALKIYNV LKTENIEKSR 120
  121 IQLSYIVGRD TTNLSEPEII RATVETVAEN TVDGIIAPMF YAFIGGAPLA MAYKAINTLD 180
  181 STVGYKNKKY KDIGFASAKI DDIANYIPAR ISVILMTIGS FFLNYNYRNC FKISIRDRKN 240
  241 HKSPNCAFSE GAVSGALGIQ LGGTNVYFGE KVYKPTIGDK LREIDKEDII KTNKIMYASS 300
  301 FVSMLVFTLI YVLCRMILIN LII

Type	Start	End	Confidence
Cytoplasmic	1	49	0.96
Transmembrane Helix	50	70	0.91
Non-Cytoplasmic	71	75	0.70
Transmembrane Helix	76	96	0.87
Cytoplasmic	97	153	0.92
Transmembrane Helix	154	173	0.75
Non-Cytoplasmic	174	205	0.78
Transmembrane Helix	206	227	0.76
Cytoplasmic	228	296	0.64
Transmembrane Helix	297	319	0.88
Non-Cytoplasmic	320	323	0.48