YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|126697834, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.52
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	16	0.76
Transmembrane Helix	17	39	0.82
Non-Cytoplasmic	40	59	0.69
Transmembrane Helix	60	82	0.79
Cytoplasmic	83	114	0.72
Transmembrane Helix	115	134	0.59
Non-Cytoplasmic	135	166	0.54
Transmembrane Helix	167	190	0.84
Cytoplasmic	191	202	0.46
Transmembrane Helix	203	226	0.83
Non-Cytoplasmic	227	235	0.45
Transmembrane Helix	236	252	0.52
Cytoplasmic	253	277	0.90
Transmembrane Helix	278	299	0.91
Non-Cytoplasmic	300	337	0.95
Transmembrane Helix	338	362	0.87
Cytoplasmic	363	389	0.88
Transmembrane Helix	390	409	0.88
Non-Cytoplasmic	410	433	0.95
Transmembrane Helix	434	456	0.88
Cytoplasmic	457	604	0.95

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIFVFIRIVA FFGTLRILFP AGTPALFKSL FAIIISILIS STMQIEYATN IDNIVLFTLY  60
   61 GVNETITGIM LGYITNLCFY SIRMAGSMMD QQMGLSMINM FDPNSMTQTT LIDNLMNWTA 120
  121 LMIFFSMDGH HVLIRGIRYS FELIPIGKPF VDNNIDYIIN IFVQCFLTGF KIAIPIVLCL 180
  181 LMADFILGLI SRSVPQLNVM IVGMPLKILV GIALFIISIP LIVNQISHLL SQIPKMYEGT 240
  241 FALAPMFFMG SADKTEEATP KKKGEQRKKG NIAKSRELPV AMTLLAFTLL VPTLFSYVVD 300
  301 TLKSSLNYFL SLDFYMNINY SNLEKLVIAG LMDFFKIFLP IAIPFLVLGI IANLFQVGIL 360
  361 FTGETLKPNL SKLNPISGFK NMFSMRSLST LIKDTAIISI LAYIGYTFFQ DNYLDILKLG 420
  421 NIYLPTLMYT VKDLVYSILS KICVAMIAIA VADYVYQRYS HKKQLRMTKQ EVKDEYKNSE 480
  481 GDPEVKAKIK QKQRQISSQR TMQAVPSATV IVTNPTHLSI AVRYEKGKDQ APVVVAKGAD 540
  541 YLAFKIREIA KGNDIPIIEN KPIARLLYKQ VEIDQEIPED MYQAFAEILV AVYKIKNRYK 600
  601 VPKR