YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|126700244, gi...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.49
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVLNMEKVCV LGTGSWGSAL ALGLAKKGND VSMWTRKEEQ AKKINRTKEN TDYLPGVLFP  60
   61 NNITISTDIE KTIKDCKVIV LAVPSQAVRS TCQKIKPFIK EGQVIVNVAK GLEKGTGLRL 120
  121 SQVCEEELPQ NPYVILSGPS HAEEVARDIP TTVVVASKDL KIAQMIQDLF MSPKLRVYTN 180
  181 PDIVGVELGG ALKNIIAFGA GICDGLGYGD NAKAALMTRG ISEMSRLGIA MGANMSTFAG 240
  241 LSGIGDLIVT CTSMHSRNRR AGILIGKGMS LEDTLKEVKM VVEGITATEV AHDVAEKLDI 300
  301 DMPITNAIYS VIKKGSNPKE VGIELMMRSK KHEMEEVVLG DDI

Type	Start	End	Confidence
Signal Peptide	1	21	0.83
N-region	1	12
H-region	13	18
C-region	19	21
Cleavage Site	21	22
Non-Cytoplasmic	22	343	0.82