YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|12005918, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.66
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQEPRRVTHC LGKRGVKTPQ LQPGSAFLPR VRRQSFTARS DSYTTVRDFL AVPRTISSAS  60
   61 ATLIMAVAVS HFRPGPEVWD TASMAASKVK QDMPPPGGYG PIDYKRNLPR RGLSGYSMLA 120
  121 IGIGTLIYGH WSIMKWNRER RRLQIEDFEA RIALLPLLQA ETDRRTLQML RENLEEEAII 180
  181 MKDVPDWKVG ESVFHTTRWV PPLIGELYGL RTTEEALHAS HGFMWYT

Type	Start	End	Confidence
Cytoplasmic	1	51	0.88
Transmembrane Helix	52	72	0.66
Non-Cytoplasmic	73	112	0.77
Transmembrane Helix	113	134	0.90
Cytoplasmic	135	227	0.79