YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|115255946, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.77
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MERDMETPFP PFEPNGPDDS ARGPRLREIP LRLVFPNLIT ILAICAGLTG IRLAFENRYE  60
   61 LAVSMVLLAA FLDGIDGRVA RLMKATSKFG AQMDSLADIV NFGVAPALVV YVFALDQARS 120
  121 LGWIAALIYA IAAGLRLARF NVMAERENKA SWQSEYFVGV PAPAGAMLVL LPVYLGFLGL 180
  181 ATDRTFAYLS SIYTVLIAFL LISRLPVWSG KSEGNRLRRD LVLPMMLGVV LYVALLMSYT 240
  241 WEVMVFTVAA YLISLPFGAR KWRRKYGTLT IEEPGIGDDD IGRHI

Type	Start	End	Confidence
Cytoplasmic	1	32	0.96
Transmembrane Helix	33	54	0.92
Non-Cytoplasmic	55	60	0.79
Transmembrane Helix	61	80	0.90
Cytoplasmic	81	94	0.89
Transmembrane Helix	95	115	0.91
Non-Cytoplasmic	116	120	0.88
Transmembrane Helix	121	140	0.93
Cytoplasmic	141	155	0.92
Transmembrane Helix	156	178	0.92
Non-Cytoplasmic	179	185	0.83
Transmembrane Helix	186	208	0.90
Cytoplasmic	209	220	0.83
Transmembrane Helix	221	236	0.94
Non-Cytoplasmic	237	242	0.56
Transmembrane Helix	243	259	0.82
Cytoplasmic	260	285	0.77