YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|115256456, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.80
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSGDIEDKPQ PLIEHLMELR TRLMWSIGAF FVAFIACFFF AKNLFNYLVI PYKTAVQWAN  60
   61 LDVEKAQLIY TAPQEFFFTQ VKVAMFGGLV VAFPIIAAQV YKFVAPGLYK NERQAFLPFL 120
  121 VASPVLFLMG GALVYFFFTP MVMWFFLSMQ QAPGHDEIAI SLMPKVSEYL SLIMTLVFSF 180
  181 GLVFQLPVIT TLLARVGLLT SQWLAEKRKF AIVLAFVVAA VLTPPDPMSQ IGLAIPTILL 240
  241 YEISIYAARL VERQRARQAV EKETGSADVA KTDSV

Type	Start	End	Confidence
Cytoplasmic	1	20	0.99
Transmembrane Helix	21	42	0.91
Non-Cytoplasmic	43	82	0.93
Transmembrane Helix	83	104	0.90
Cytoplasmic	105	115	0.91
Transmembrane Helix	116	139	0.91
Non-Cytoplasmic	140	171	0.91
Transmembrane Helix	172	194	0.88
Cytoplasmic	195	209	0.78
Transmembrane Helix	210	224	0.95
Non-Cytoplasmic	225	230	0.70
Transmembrane Helix	231	250	0.80
Cytoplasmic	251	275	0.85