YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|115253031
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.66
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFAPIDPVKI PVVSNPWITM GTLIGYLLFV LKLGPKIMEH RKPFHLNGVI RIYNIFQILY  60
   61 NGLILVLGVH FLFVLKAYQI SCIVSLPMDH KYKDRERLIC TLYLVNKFVD LVETIFFVLR 120
  121 KKDRQISFLH VFHHFAMAFF GYLYYCFHGY GGVAFPQCLL NTAVHVIMYA YYYLSSISKE 180
  181 VQRSLWWKKY ITTAQLVQFA IILLHCTITL AQPNCAVNRP LTYGCGSLSA FFAVIFSQFY 240
  241 YHNYIKPGKK SAKQNKN

Type	Start	End	Confidence
Cytoplasmic	1	11	0.66
Transmembrane Helix	12	34	0.83
Non-Cytoplasmic	35	54	0.65
Transmembrane Helix	55	75	0.83
Cytoplasmic	76	125	0.81
Transmembrane Helix	126	146	0.87
Non-Cytoplasmic	147	152	0.78
Transmembrane Helix	153	174	0.91
Cytoplasmic	175	190	0.89
Transmembrane Helix	191	211	0.90
Non-Cytoplasmic	212	219	0.82
Transmembrane Helix	220	242	0.90
Cytoplasmic	243	257	0.94