YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|115250420, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.84
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	19	0.98
Transmembrane Helix	20	41	0.93
Non-Cytoplasmic	42	58	0.91
Transmembrane Helix	59	78	0.94
Cytoplasmic	79	87	0.84
Transmembrane Helix	88	110	0.92
Non-Cytoplasmic	111	116	0.73
Transmembrane Helix	117	140	0.84
Cytoplasmic	141	150	0.83
Transmembrane Helix	151	175	0.87
Non-Cytoplasmic	176	182	0.83
Transmembrane Helix	183	203	0.95
Cytoplasmic	204	216	0.87
Transmembrane Helix	217	236	0.92
Non-Cytoplasmic	237	247	0.84
Transmembrane Helix	248	267	0.93
Cytoplasmic	268	285	0.88
Transmembrane Helix	286	306	0.94
Non-Cytoplasmic	307	319	0.81
Transmembrane Helix	320	340	0.90
Cytoplasmic	341	350	0.81
Transmembrane Helix	351	371	0.94
Non-Cytoplasmic	372	378	0.74
Transmembrane Helix	379	400	0.92
Cytoplasmic	401	417	0.90
Transmembrane Helix	418	441	0.89
Non-Cytoplasmic	442	809	0.99
Transmembrane Helix	810	828	0.97
Cytoplasmic	829	834	0.92

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVFTLNHNTS IKNKDSNPKI FLVLTLYLLG IFMGAIDTGI VSPARTIIQN SLGVNEKTGI  60
   61 WMITIYTLTY ASVIPISGKL ADKIGRKYVY LVSIFLFGSG SLICGLSSLF SNFYILLIGR 120
  121 VIQAIGGGGI MPIATAEFGT TFPENKRGMA LGLVGATYGI ANILGSSIGS TILSIFGTQN 180
  181 WKWLFFVNLP ICLIILIGGV FCIKNNKSES KEKIDKLGTL MLICIIVSLL YGLMNIDFFN 240
  241 FKNSIQDISV YPYLLTFIVL IPIFIFIENR AKDPILSFEY FLNPRILIVL ILSLIVGIGM 300
  301 MGMVFVPQYA ENALKINAGS GGYFVAILGL FAGIAAPLSG RLIDKFGAKK ILLLGFSVSM 360
  361 IGSLYLVLIA LKTNTVFSVC VSLIFMGLGM GFTMGTPLNY MMLSNTRLEE SNSALATLSL 420
  421 IRSIGTSISP AIMIGFIAHA GLSVQDNIMD LVGKPSTPKI VQLEELENMI DDLKSDPEMA 480
  481 KNLKNVSIPN MNDTSNINMD MTGGKLPKSL LNKVQSADTT NITNITKEIS TTMFDEKVPS 540
  541 IITKIQKNVQ KGIDGTQSGI NGIEDGENKL NSGIKGVQTG IDNMVKARAG INQGIDGVKK 600
  601 GIAGVDKGIK GMEQGLEKQD EAIKELTTAY NKIPTTEKTP TDNENNSNEQ NQSNTSNSES 660
  661 DDTKNDSTEN KNNNSSENKP NVNEQKESLN AQIQQLKKTR DDLNTKLQKN KTQKNELSKK 720
  721 LRSMESQKKE LQSKLNNSIS QKKDMEKSLD TMQQQKKSLQ AVLAKTQEVK TEIPKAFDKS 780
  781 KLDYINSIEN NRTKIENTLQ STLNSGFKQM YITVFCVNLL AFIILLFYKE NKTR