YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|436224
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.77
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VVSGEEVAPE VALAVALRRS KEPATEFCCL GGAAPHRSLH LAAAMAKGRV AERSQLGAHH  60
   61 TTPVGDGAAG TRGLAAPGSR DHQKEKSWVE AGSARMSLLI LVSIFLSAAF VMFLVYKNFP 120
  121 QLSEEERVNM KVPRDMDDAK ALGKVLSKYK DTFYVQVLVA YFATYIFLQT FAIPGSIFLS 180
  181 ILSGFLYPFP LALFLVCLCS GLGASFCYML SYLVGRPVVY KYLTEKAVKW SQQVERHREH 240
  241 LINYIIFLRI TPFLPNWFIN ITSPVINVPL KVFFIGTFLG VAPPSFVAIK AGTTLYQLTT 300
  301 AGEAVSWNSI FILMILAVLS ILPAIFQKKL KQKFE

Type	Start	End	Confidence
Cytoplasmic	1	95	0.87
Transmembrane Helix	96	116	0.91
Non-Cytoplasmic	117	160	0.84
Transmembrane Helix	161	182	0.84
Cytoplasmic	183	190	0.56
Transmembrane Helix	191	212	0.91
Non-Cytoplasmic	213	239	0.82
Transmembrane Helix	240	261	0.77
Cytoplasmic	262	269	0.70
Transmembrane Helix	270	292	0.83
Non-Cytoplasmic	293	303	0.82
Transmembrane Helix	304	326	0.90
Cytoplasmic	327	335	0.87