YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|114432108, gi...
Protein type:	Transmembrane
Type Confidence:	0.96
Topology Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MILSVLSSPA LVSGLMVVRA KNPVHSVLFP ILVFCDTSGL LILLGLDFSA MIFPVVHIGA  60
   61 IAVSFLFVVM MFNIQIAEIH EEVLRYLPVS GIIGLIFWWE MFFILDNETI PLLPTHRNTT 120
  121 SLGYTVYAGK VRSWTNLETL GNLLYTYYSV WFLVSSLILL VAMIGAIVLT MHRTTIHMVK 180
  181 RQDVFRRNAL DSRRTTIHIQ NRRFFSHKAG GGDDAPVPPA DPESIRSDLA ERIARIYRRA 240
  241 GEEQSLVEDG TTPRELVDNV LPEGAELPLL QETWVQFVRD ASHSEFWVEI DNLRRKYAHA 300
  301 ARGEPDTPDP DAPLVEPDSP QSGGGDSAGS TGE

Type	Start	End	Confidence
Cytoplasmic	1	23	0.92
Transmembrane Helix	24	46	0.86
Non-Cytoplasmic	47	52	0.77
Transmembrane Helix	53	74	0.92
Cytoplasmic	75	82	0.88
Transmembrane Helix	83	104	0.91
Non-Cytoplasmic	105	149	0.95
Transmembrane Helix	150	171	0.95
Cytoplasmic	172	333	0.99