YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|505102
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.59
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RVYADAPAKL LLPPPAAWDL AVRLRGAEAA SERQVYSVTM KLLLLHPAFQ SCLLLTLLGL  60
   61 WRTTPEAHAS SLGAPAISAA SFLQDLIHRY GEGDSLTLQQ LKALLNHLDV GVGRGNVTQH 120
  121 VQGHRNLSTC FSSGDLFTAH NFSEQSRIGS SELQEFCPTI LQQLDSRACT SENQENEENE 180
  181 QTEEGRPSAV EVWGYGLLCV TVISLCSLLG ASVVPFMKKT FYKRLLLYFI ALAIGTLYSN 240
  241 ALFQLIPEAF GFNPLEDYYV SKSAVVFGGF YLFFFTEKIL KILLKQKNEH HHGHSHYASE 300
  301 SLPSKKDQEE GVMEKLQNGD LDHMIPQHCS SELDGKAPMV DEKVIVGSLS VQDLQASQSA 360
  361 CYWLKGVRYS DIGTLAWMIT LSDGLHNFID GLAIGASFTV SVFQGISTSV AILCEEFPHE 420
  421 LGDFVILLNA GMSIQQALFF NFLSACCCYL GLAFGILAGS HFSANWIFAL AGGMFLYISL 480
  481 ADMFPEMNEV CQEDERKGSI LIPFIIQNLG LLTGFTIMVV LTMYSGQIQI G

Type	Start	End	Confidence
Cytoplasmic	1	41	0.59
Transmembrane Helix	42	61	0.59
Non-Cytoplasmic	62	191	0.95
Transmembrane Helix	192	216	0.88
Cytoplasmic	217	224	0.90
Transmembrane Helix	225	246	0.92
Non-Cytoplasmic	247	257	0.91
Transmembrane Helix	258	276	0.90
Cytoplasmic	277	436	0.83
Transmembrane Helix	437	458	0.90
Non-Cytoplasmic	459	463	0.60
Transmembrane Helix	464	484	0.87
Cytoplasmic	485	500	0.72
Transmembrane Helix	501	524	0.87
Non-Cytoplasmic	525	531	0.67