YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|120602572, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.77
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRGRLPLSTR IYRLRNRFGS VWPLLIGQVS LLCVFICATL GYMYIEGWSA FDSFYMVVIT  60
   61 LSTIGFGEVH PLSSQGRLLT TLVVFAGVGN FAFIIGAFSQ LLVDGKLYRY MGRRRVLKAI 120
  121 AKLRDHCIVC GYGRIGSVVA KELMEEGVAL VVIENDPAMI EALETEGILH LAGDATNDEL 180
  181 LQAAGIERAR ALVAALSLDS ANVYVVLSAH QINPSMTIVA RASEPSHIGK LKLAGADRVF 240
  241 LPHHLGGLRM AQSILRPTVT SFIELAHTRS DLSIQMEELE IGDDSVLVGK TLIESGIRPQ 300
  301 YNLIIIGVKR PDGTMHFNPE STYTLQARDT LIAVGFPENF KQFQEIL

Type	Start	End	Confidence
Cytoplasmic	1	20	0.96
Transmembrane Helix	21	43	0.96
Non-Cytoplasmic	44	50	0.77
Transmembrane Helix	51	70	0.77
Cytoplasmic	71	77	0.70
Transmembrane Helix	78	99	0.90
Non-Cytoplasmic	100	347	0.84